PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111892001
Common NameGSBRNA2T00084442001, GSBRNA2T00111892001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 282aa    MW: 30995 Da    PI: 10.2491
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111892001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA90.81.8e-28136195258
            CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           +++VN+KQy++I++RRq+Rak+++   ++k ++k rkpy+h+SRh hAlrRpRgsgGrF
  GSBRNA2T00111892001 136 GTIFVNSKQYHAIIRRRQSRAKAAAvldQNKPSSKFRKPYMHHSRHLHALRRPRGSGGRF 195
                          689*********************9999*******************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-28133198IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.984134198IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-20137159IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-22137195IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-20172195IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAMQTMREGL PSAPQISWWN AFGSQPLTPE SLSGDNDSLA GVKVRSAGGI EQGVNKQSNS  60
VSHFAFSLGD VKSPRVVPKP HGSAFSMQPP YLELGFSQPQ MYKKYPCVEQ QYYGVLSPYG  120
SHSSVMLPLN METEDGTIFV NSKQYHAIIR RRQSRAKAAA VLDQNKPSSK FRKPYMHHSR  180
HLHALRRPRG SGGRFLNTKS QNNAKKADGT KQTQPQQSNS QDSDVLHPEN VTMNLSNRLG  240
SEVTSMNYFL SSSVHPLGGM VMPSKWITAA AMDNGCCSFK T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_A2e-14138198562HAPB protein
4g91_A2e-14138198562HAPB protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111892001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013684485.10.0PREDICTED: nuclear transcription factor Y subunit A-2-like
RefseqXP_013625433.10.0PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1
RefseqXP_013625432.10.0PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1
SwissprotQ9M9X41e-162NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLA0A078FP680.0A0A078FP68_BRANA; BnaA03g29140D protein
STRINGBra001164.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.11e-163nuclear factor Y, subunit A2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]